What is BEAST? BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict …

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This tutorial provides guidelines for implementing and using the adjusted Bayes Factor (BF adj) to detect and mitigate the impact of sampling bias in discrete phylogeographic inference using CTMC …

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#assign maxDate=0> #list taxa as taxon> #if taxon.date?number gt maxDate> #assign maxDate=taxon.date?number> #assign cutOff=maxDate-2019.75> #-- old max date - cutoff ...

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Second Tutorial An introductory tutorial about interpreting BEAST output. Estimating Rates and Dates A basic tutorial on inferring rates and dates from tip-dated virus data. Using TempEst for data …

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Turning BEAST’s XML into an ‘epochized’ analysis Open the file generated in the previous section in your favourite text editor. Scroll down to the block where the HKY model is defined. We need to …